Species |
LncRNA experiment |
LncRNA name |
Tissue |
Cell line |
Disease state |
GSE ID |
Reference |
Expression value |
Differential genes |
Human |
Knockdown |
TINCR |
Organotypic human epidermis |
NA |
Normal |
GSE40122 |
Kretz M, Siprashvili Z, Chu C, Webster DE et al. Control of somatic tissue differentiation by the long non-coding RNA TINCR. Nature 2013 Jan 10;493(7431):231-5.
|
Download |
Download |
Human |
Knockdown |
BANCR |
Skin |
Colo829 |
Melanoma |
GSE37132 |
Flockhart RJ, Webster DE, Qu K, Mascarenhas N et al. BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration. Genome Res 2012 Jun;22(6):1006-14.
|
Download |
Download |
Human |
Knockdown |
TUG1 |
Foot |
NA |
Normal |
GSE16226 |
Khalil AM, Guttman M, Huarte M, Garber M et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009 Jul 14;106(28):11667-72.
|
Download |
Download |
Human |
Knockdown |
TUG1 |
Lung |
NA |
Normal |
GSE16226 |
Khalil AM, Guttman M, Huarte M, Garber M et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009 Jul 14;106(28):11667-72.
|
Download |
Download |
Human |
Knockdown |
lincFOXF1 |
Lung |
NA |
Normal |
GSE16226 |
Khalil AM, Guttman M, Huarte M, Garber M et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009 Jul 14;106(28):11667-72.
|
Download |
Download |
Human |
Knockdown |
lincIRX5 |
Foot |
NA |
Normal |
GSE16226 |
Khalil AM, Guttman M, Huarte M, Garber M et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009 Jul 14;106(28):11667-72.
|
Download |
Download |
Human |
Knockdown |
lincMTX2 |
Foot |
NA |
Normal |
GSE16226 |
Khalil AM, Guttman M, Huarte M, Garber M et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009 Jul 14;106(28):11667-72.
|
Download |
Download |
Human |
Knockdown |
lincTNS1 |
Lung |
NA |
Normal |
GSE16226 |
Khalil AM, Guttman M, Huarte M, Garber M et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009 Jul 14;106(28):11667-72.
|
Download |
Download |
Human |
Knockdown |
lincZFP161 |
Lung |
NA |
Normal |
GSE16226 |
Khalil AM, Guttman M, Huarte M, Garber M et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009 Jul 14;106(28):11667-72.
|
Download |
Download |
Human |
Knockdown |
lincSTXBP5 |
Foot |
NA |
Normal |
GSE16226 |
Khalil AM, Guttman M, Huarte M, Garber M et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009 Jul 14;106(28):11667-72.
|
Download |
Download |
Human |
Knockdown |
ANCR |
NA |
Keratinocytes |
Normal |
GSE34528 |
Kretz M, Webster DE, Flockhart RJ, Lee CS et al. Suppression of progenitor differentiation requires the long noncoding RNA ANCR. Genes Dev 2012 Feb 15;26(4):338-43.
|
Download |
Download |
Mouse |
Knockdown |
AK005218 |
adipocyte |
C57BL/6 |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci U S A 2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
AK016444 |
adipocyte |
C57BL/6 |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci U S A 2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
AK017076 |
adipocyte |
C57BL/6 |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci U S A 2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
AK040027 |
adipocyte |
C57BL/6 |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci U S A 2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
AK040954 |
adipocyte |
C57BL/6 |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci U S A 2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
AK045415 |
adipocyte |
C57BL/6 |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci U S A 2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
AK136742 |
adipocyte |
C57BL/6 |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci U S A 2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
AK161599 |
adipocyte |
C57BL/6 |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci U S A 2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Human |
Knockdown |
MALAT1 |
Lung |
WI38 |
Normal |
GSE43830 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Fendrr |
Heart ventricle |
NA |
Normal |
GSE43078 |
Grote P, Wittler L, Hendrix D, Koch F et al. The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse. Dev Cell 2013 Jan 28;24(2):206-14.
|
Download |
Download |
Human |
Knockdown |
DA125942 |
bone marrow |
NA |
Normal |
GSE39896 |
Maass PG, Rump A, Schulz H, Stricker S et al. A misplaced lncRNA causes brachydactyly in humans. J Clin Invest 2012 Nov 1;122(11):3990-4002.
|
Download |
Download |
Human |
Overexpression |
DA125942 |
bone marrow |
NA |
Normal |
GSE39896 |
Maass PG, Rump A, Schulz H, Stricker S et al. A misplaced lncRNA causes brachydactyly in humans. J Clin Invest 2012 Nov 1;122(11):3990-4002.
|
Download |
Download |
Human |
Knockdown |
BEHOT |
bone marrow |
SH-SY5Y |
Neuroblastoma |
GSE40680 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
NEAT1 |
Cervix |
HeLa |
Cervical cancer |
GSE45158 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
linc1230 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1239 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1245 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1259 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1261 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1262 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1270 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1274 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1290 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1293 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1307 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1312 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1313 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1315 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1316 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1328 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1331 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1335 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1347 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1349 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1354 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1361 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1366 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1368 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1369 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1382 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1385 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1386 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1388 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1389 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1390 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1391 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1400 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1410 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1411 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1412 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1413 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1418 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1419 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1421 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1422 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1425 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1427 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1428 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1434 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1435 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1450 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1454 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1456 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1457 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1463 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1468 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1470 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1471 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1473 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1483 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1517 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1524 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1540 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1543 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1552 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1555 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1557 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1558 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1559 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1572 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1581 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1582 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1588 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1589 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1592 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1595 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1599 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1601 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1602 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1603 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1604 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1608 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1609 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1610 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1611 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1612 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1613 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1614 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1615 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1617 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1618 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1622 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1623 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1624 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1626 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1629 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1630 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1631 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1632 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1633 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1634 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Mouse |
Knockdown |
linc1635 |
Embryo |
V6.5 |
Normal |
GSE30245 |
Guttman M, Donaghey J, Carey BW, Garber M et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 Aug 28;477(7364):295-300.
|
Download |
Download |
Human |
Knockdown |
lnrCXCR4 |
NA |
Koptk1 |
leukemia |
GSE104018 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
lnrCXCR4 |
NA |
CUTLL1 |
leukemia |
GSE104018 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
lnrCXCR4 |
NA |
HpbALL |
leukemia |
GSE104018 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
lnrCXCR4 |
NA |
Koptk1 |
leukemia |
GSE104018 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
lnrCXCR4 |
NA |
CUTLL1 |
leukemia |
GSE104018 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LAST |
NA |
HCT116 |
Normal |
GSE106917 |
Cao L, Zhang P, Li J, Wu M. LAST, a c-Myc-inducible long noncoding RNA, cooperates with CNBP to promote CCND1 mRNA stability in human cells. Elife 2017 Dec 4;6.
|
Download |
Download |
Human |
Knockdown |
SBF2-AS1 |
lung |
A549 |
lung cancer |
GSE103016 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
RAD51-AS1 |
Ovary |
SKOV3.ip |
Epithelial ovarian cancer |
GSE89374 |
Zhang X, Liu G, Qiu J, Zhang N et al.E2F1-regulated long non-coding RNA RAD51-AS1 promotes cell cycle progression, inhibits apoptosis and predicts poor prognosis in epithelial ovarian cancer.Sci Rep2017 Jun 30;7(1):4469.
|
Download |
Download |
Human |
Knockdown |
lncRNA-LBCS |
bladder |
UM-UC-3 |
bladder cancer |
GSE79832 |
Chen X, Gu P, Xie R, Han J et al. Heterogeneous nuclear ribonucleoprotein K is associated with poor prognosis and regulates proliferation and apoptosis in bladder cancer. J Cell Mol Med 2017 Jul;21(7):1266-1279.
|
Download |
Download |
Human |
Knockdown |
CASC15 |
NA |
REH |
Acute lymphatic leukemia |
GSE101149 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
IGFL2-AS1 |
breast |
MCF-10AT1 |
breast cancer |
GSE98393 |
Tracy KM, Tye CE, Page NA, Fritz AJ et al.Selective expression of long non-coding RNAs in a breast cancer cell progression model.J Cell Physiol2018 Feb;233(2):1291-1299.
|
Download |
Download |
Human |
Knockdown |
TYKRIL |
blood |
NA |
normal |
GSE84730 |
Bischoff FC, Werner A, John D, Boeckel JN et al. Identification and Functional Characterization of Hypoxia-Induced Endoplasmic Reticulum Stress Regulating lncRNA (HypERlnc) in Pericytes. Circ Res 2017 Aug 4;121(4):368-375.
|
Download |
Download |
Human |
Knockdown |
TYKRIL |
blood |
NA |
normal |
GSE84730 |
Bischoff FC, Werner A, John D, Boeckel JN et al. Identification and Functional Characterization of Hypoxia-Induced Endoplasmic Reticulum Stress Regulating lncRNA (HypERlnc) in Pericytes. Circ Res 2017 Aug 4;121(4):368-375.
|
Download |
Download |
Human |
Knockdown |
SLC25A25-AS1 |
NA |
HT29 |
Colorectal carcinoma |
GSE95605 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
SLC25A25-AS1 |
NA |
SW480 |
Colorectal carcinoma |
GSE95605 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Linc-RAM |
myoblasts |
C2C12 |
normal |
GSE72601 |
Yu X, Zhang Y, Li T, Ma Z et al.Long non-coding RNA Linc-RAM enhances myogenic differentiation by interacting with MyoD.Nat Commun2017 Jan 16;8:14016.
|
Download |
Download |
Mouse |
Overexpressed |
Linc-RAM |
myoblasts |
C2C12 |
normal |
GSE72601 |
Yu X, Zhang Y, Li T, Ma Z et al.Long non-coding RNA Linc-RAM enhances myogenic differentiation by interacting with MyoD.Nat Commun2017 Jan 16;8:14016.
|
Download |
Download |
Mouse |
Knockdown |
Evx1as |
NA |
NA |
normal |
GSE62899 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Evx1 |
NA |
NA |
normal |
GSE62899 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Lhx1os |
NA |
NA |
normal |
GSE62899 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Fendrr |
NA |
NA |
normal |
GSE62899 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Pou3f3os |
NA |
NA |
normal |
GSE62899 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Nr2f1as |
NA |
NA |
normal |
GSE62899 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Sox21os |
NA |
NA |
normal |
GSE62899 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
NORAD |
NA |
U2OS |
normal |
GSE79804 |
Tichon A, Gil N, Lubelsky Y, Havkin Solomon T et al. A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells. Nat Commun 2016 Jul 13;7:12209.
|
Download |
Download |
Human |
Knockdown |
NORAD |
NA |
U2OS |
normal |
GSE79804 |
Tichon A, Gil N, Lubelsky Y, Havkin Solomon T et al. A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells. Nat Commun 2016 Jul 13;7:12209.
|
Download |
Download |
Human |
Overexpressed |
NORAD |
NA |
U2OS |
normal |
GSE79804 |
Tichon A, Gil N, Lubelsky Y, Havkin Solomon T et al. A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells. Nat Commun 2016 Jul 13;7:12209.
|
Download |
Download |
Human |
Knockdown |
NORAD |
NA |
U2OS |
normal |
GSE79804 |
Tichon A, Gil N, Lubelsky Y, Havkin Solomon T et al. A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells. Nat Commun 2016 Jul 13;7:12209.
|
Download |
Download |
Human |
Knockdown |
NORAD |
breast |
HeLa |
breast cancer |
GSE79804 |
Tichon A, Gil N, Lubelsky Y, Havkin Solomon T et al. A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells. Nat Commun 2016 Jul 13;7:12209.
|
Download |
Download |
Human |
Overexpressed |
NORAD |
breast |
HeLa |
breast cancer |
GSE79804 |
Tichon A, Gil N, Lubelsky Y, Havkin Solomon T et al. A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells. Nat Commun 2016 Jul 13;7:12209.
|
Download |
Download |
Human |
Knockdown |
CAT1 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT2 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT3 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT4 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT5 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT6 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT7 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT8 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT9 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT10 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT11 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT12 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT13 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT14 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT15 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT16 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
CAT17 |
breast |
HeLa F-17 |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
SCR |
breast |
H3 ES cells |
breast cancer |
GSE61549 |
Ray MK, Wiskow O, King MJ, Ismail N et al. CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem 2016 Sep 9;291(37):19558-72.
|
Download |
Download |
Human |
Knockdown |
SLNCR1 |
skin |
WM1976 |
malignant melanoma |
GSE77902 |
Schmidt K, Joyce CE, Buquicchio F, Brown A et al. The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region. Cell Rep 2016 May 31;15(9):2025-37.
|
Download |
Download |
Mouse |
Knockdown |
Evx1as |
embryonic stem cells |
CJ9 |
normal |
GSE70419 |
Luo S, Lu JY, Liu L, Yin Y et al. Divergent lncRNAs Regulate Gene Expression and Lineage Differentiation in Pluripotent Cells. Cell Stem Cell 2016 May 5;18(5):637-52.
|
Download |
Download |
Mouse |
Knockdown |
Evx1 |
embryonic stem cells |
CJ9 |
normal |
GSE70419 |
Luo S, Lu JY, Liu L, Yin Y et al. Divergent lncRNAs Regulate Gene Expression and Lineage Differentiation in Pluripotent Cells. Cell Stem Cell 2016 May 5;18(5):637-52.
|
Download |
Download |
Human |
Knockdown |
GAS5 |
human embryonic stem cells |
H1 |
normal |
GSE66993 |
Xu C, Zhang Y, Wang Q, Xu Z et al. Long non-coding RNA GAS5 controls human embryonic stem cell self-renewal by maintaining NODAL signalling. Nat Commun 2016 Nov 4;7:13287.
|
Download |
Download |
Human |
Overexpressed |
GAS5 |
human embryonic stem cells |
H1 |
normal |
GSE66993 |
Xu C, Zhang Y, Wang Q, Xu Z et al. Long non-coding RNA GAS5 controls human embryonic stem cell self-renewal by maintaining NODAL signalling. Nat Commun 2016 Nov 4;7:13287.
|
Download |
Download |
Mouse |
Knockdown |
Malat1 |
Mammary tumor |
C57BL/6 |
mammary carcinoma |
GSE67647 |
Arun G, Diermeier S, Akerman M, Chang KC et al. Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss. Genes Dev 2016 Jan 1;30(1):34-51.
|
Download |
Download |
Mouse |
Knockdown |
Malat1 |
Mammary tumor |
C57BL/6 |
mammary carcinoma |
GSE67647 |
Arun G, Diermeier S, Akerman M, Chang KC et al. Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss. Genes Dev 2016 Jan 1;30(1):34-51.
|
Download |
Download |
Mouse |
Knockdown |
Malat1 |
Mammary tumor |
C57BL/6 |
mammary carcinoma |
GSE67647 |
Arun G, Diermeier S, Akerman M, Chang KC et al. Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss. Genes Dev 2016 Jan 1;30(1):34-51.
|
Download |
Download |
Mouse |
Knockdown |
H19 |
myotubes |
Mouse C3H myoblast |
normal |
GSE72941 |
Zhou J, Yang L, Zhong T, Mueller M et al. H19 lncRNA alters DNA methylation genome wide by regulating S-adenosylhomocysteine hydrolase. Nat Commun 2015 Dec 21;6:10221.
|
Download |
Download |
Mouse |
Knockdown |
lnc-OPC |
cerebral cortex |
CD-1 |
normal |
GSE74647 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
lncRNA152 |
breast |
MCF-7 |
breast cancer |
GSE63189 |
Sun M, Gadad SS, Kim DS, Kraus WL. Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells. Mol Cell 2015 Aug 20;59(4):698-711.
|
Download |
Download |
Human |
Knockdown |
lncRNA152 |
breast |
MCF-7 |
breast cancer |
GSE63189 |
Sun M, Gadad SS, Kim DS, Kraus WL. Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells. Mol Cell 2015 Aug 20;59(4):698-711.
|
Download |
Download |
Human |
Knockdown |
lncRNA67 |
breast |
MCF-7 |
breast cancer |
GSE63189 |
Sun M, Gadad SS, Kim DS, Kraus WL. Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells. Mol Cell 2015 Aug 20;59(4):698-711.
|
Download |
Download |
Human |
Knockdown |
lncRNA67 |
breast |
MCF-7 |
breast cancer |
GSE63189 |
Sun M, Gadad SS, Kim DS, Kraus WL. Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells. Mol Cell 2015 Aug 20;59(4):698-711.
|
Download |
Download |
Human |
Knockdown |
PANCR |
Cardiomyocyte |
H9 |
normal |
GSE67844 |
Gore-Panter SR, Hsu J, Barnard J, Moravec CS et al. PANCR, the PITX2 Adjacent Noncoding RNA, Is Expressed in Human Left Atria and Regulates PITX2c Expression. Circ Arrhythm Electrophysiol 2016 Jan;9(1):e003197.
|
Download |
Download |
Mouse |
Knockdown |
PNKY |
NA |
C57/B6 |
normal |
GSE65542 |
Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ et al.The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.Cell Stem Cell2015 Apr 2;16(4):439-447.
|
Download |
Download |
Mouse |
Knockdown |
Firre |
Patski cells |
BL6/spretus |
normal |
GSE66172 |
Yang F, Deng X, Ma W, Berletch JB et al.The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation.Genome Biol2015 Mar 12;16:52.
|
Download |
Download |
Mouse |
Knockdown |
LncHSC-1 |
KSL cells |
C57BL/6 |
normal |
GSE53928 |
Luo M, Jeong M, Sun D, Park HJ et al.Long non-coding RNAs control hematopoietic stem cell function.Cell Stem Cell2015 Apr 2;16(4):426-38.
|
Download |
Download |
Mouse |
Knockdown |
LncHSC-2 |
KSL cells |
C57BL/6 |
normal |
GSE53928 |
Luo M, Jeong M, Sun D, Park HJ et al.Long non-coding RNAs control hematopoietic stem cell function.Cell Stem Cell2015 Apr 2;16(4):426-38.
|
Download |
Download |
Mouse |
Knockdown |
Esrp2-as |
mammary gland tumor |
M6 |
mammary gland tumor |
GSE96641 |
Heilmann K, Toth R, Bossmann C, Klimo K et al.Genome-wide screen for differentially methylated long noncoding RNAs identifies Esrp2 and lncRNA Esrp2-as regulated by enhancer DNA methylation with prognostic relevance for human breast cancer.Oncogene2017 Nov 16;36(46):6446-6461.
|
Download |
Download |
Mouse |
Overexpressed |
Esrp2-as |
mammary gland tumor |
M6 |
mammary gland tumor |
GSE96641 |
Heilmann K, Toth R, Bossmann C, Klimo K et al.Genome-wide screen for differentially methylated long noncoding RNAs identifies Esrp2 and lncRNA Esrp2-as regulated by enhancer DNA methylation with prognostic relevance for human breast cancer.Oncogene2017 Nov 16;36(46):6446-6461.
|
Download |
Download |
Mouse |
Overexpressed |
Esrp2-as |
mammary gland tumor |
M6 |
mammary gland tumor |
GSE96641 |
Heilmann K, Toth R, Bossmann C, Klimo K et al.Genome-wide screen for differentially methylated long noncoding RNAs identifies Esrp2 and lncRNA Esrp2-as regulated by enhancer DNA methylation with prognostic relevance for human breast cancer.Oncogene2017 Nov 16;36(46):6446-6461.
|
Download |
Download |
Human |
Knockdown |
DNM3OS |
ovarian cancer |
SKOV3 |
ovarian cancer |
GSE104295 |
Mitra R, Chen X, Greenawalt EJ, Maulik U et al.Decoding critical long non-coding RNA in ovarian cancer epithelial-to-mesenchymal transition.Nat Commun2017 Nov 17;8(1):1604.
|
Download |
Download |
Human |
Knockdown |
BLACAT2 |
bladder cancer cell |
UM-UC-3 |
bladder cancer |
GSE101287 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
MANCR |
breast |
MDA-MB-231 |
Triple negative breast cancer |
GSE102155 |
Tracy KM, Tye CE, Ghule PN, Malaby HLH et al.Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer.Mol Cancer Res2018 Jan 29.
|
Download |
Download |
Mouse |
Knockdown |
lncRNA_041249 |
Primarybone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Mouse |
Knockdown |
Pvt1 |
Primary bone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Mouse |
Knockdown |
lncRNA_097790 |
Primary bone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Mouse |
Knockdown |
lncRNA_104449 |
Primary bone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Mouse |
Knockdown |
lncRNA_096443 |
Primary bone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Mouse |
Knockdown |
lncRNA_141992 |
Primary bone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Mouse |
Knockdown |
lncRNA_166788 |
Primary bone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Mouse |
Knockdown |
lncRNA_124982 |
Primary bone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Mouse |
Knockdown |
lncRNA_177417 |
Primary bone marrow |
C57BL6 |
normal |
GSE90059 |
Delás MJ, Sabin LR, Dolzhenko E, Knott SR et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife 2017 Sep 6;6.
|
Download |
Download |
Human |
Knockdown |
HIPSTR |
embryo |
HEK293 |
normal |
GSE77937 |
Yunusov D, Anderson L, DaSilva LF, Wysocka J et al. HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Sci Rep 2016 Sep 8;6:32753.
|
Download |
Download |
Human |
Knockdown |
HIPSTR |
embryo |
H1BP |
normal |
GSE77937 |
Yunusov D, Anderson L, DaSilva LF, Wysocka J et al. HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Sci Rep 2016 Sep 8;6:32753.
|
Download |
Download |
Human |
Overexpression |
SLNCR1 |
skin |
A375 |
malignant melanoma |
GSE77901 |
Schmidt K, Joyce CE, Buquicchio F, Brown A et al. The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region. Cell Rep 2016 May 31;15(9):2025-37.
|
Download |
Download |
Human |
Knockdown |
DINO |
lung |
FL2 |
normal |
GSE76420 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
DINO |
lung |
FL3 |
normal |
GSE76417 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
FMR4 |
Human Embryonic Kidney |
HEK 293T cells |
intellectual disability and au |
GSE70817 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
Blnc1 |
brown adipocyte |
NA |
normal |
GSE57540 |
Zhao XY, Li S, Wang GX, Yu Q et al.A long noncoding RNA transcriptional regulatory circuit drives thermogenic adipocyte differentiation.Mol Cell2014 Aug 7;55(3):372-82.
|
Download |
Download |
Human |
Knockdown |
SENCR |
coronary artery smooth muscle |
NA |
NA |
GSE51878 |
Bell RD, Long X, Lin M, Bergmann JH et al. Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA. Arterioscler Thromb Vasc Biol 2014 Jun;34(6):1249-59.
|
Download |
Download |
Mouse |
Knockdown |
LncRNA-smad7 |
skeletal muscle |
C57BL/6 |
skeletal muscle damage |
GSE106365 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
SNHG1 |
colon |
HCT116 |
Cancer |
GSE69888 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
SNHG1 |
colon |
HCT116 |
Cancer |
GSE69888 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
NRAV |
lung |
A549 |
normal |
GSE48874 |
Ouyang J, Zhu X, Chen Y, Wei H et al. NRAV, a long noncoding RNA, modulates antiviral responses through suppression of interferon-stimulated gene transcription. Cell Host Microbe 2014 Nov 12;16(5):616-26.
|
Download |
Download |
Human |
Knockdown |
LincIN |
breast |
MDA-MB-231-Luc-D3H1 |
breast |
GSE79214 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
RMEL3 |
human malignant melanoma cell |
A375-SM |
melanoma |
GSE72675 |
Goedert L, Pereira CG, Roszik J, Pla莽a JR et al. RMEL3, a novel BRAFV600E-associated long noncoding RNA, is required for MAPK and PI3K signaling in melanoma. Oncotarget 2016 Jun 14;7(24):36711-36718.
|
Download |
Download |
Human |
Knockdown |
linc00598 |
NA |
HEK293t |
normal |
GSE80514 |
Jeong OS, Chae YC, Jung H, Park SC et al. Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint. Sci Rep 2016 Aug 30;6:32172
|
Download |
Download |
Human |
Knockdown |
NRCP |
NA |
SKOV3 |
normal |
GSE74447 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
BALR-2 |
B-cells |
RS4;11 |
B-acute lymphoblastic leukemia |
GSE65646 |
Fernando TR, Rodriguez-Malave NI, Waters EV, Yan W et al.LncRNA Expression Discriminates Karyotype and Predicts Survival in B-Lymphoblastic Leukemia.Mol Cancer Res2015 May;13(5):839-51.
|
Download |
Download |
Mouse |
Knockdown |
Dali |
neuroblastoma cell line |
neuro 2A (N2A) |
normal |
GSE62035 |
Chalei V, Sansom SN, Kong L, Lee S et al.The long non-coding RNA Dali is an epigenetic regulator of neural differentiation.Elife2014 Nov 21;3:e04530.
|
Download |
Download |
Mouse |
Knockdown |
Dali |
neuroblastoma cell line |
neuro 2A (N2A) |
normal |
GSE62035 |
Chalei V, Sansom SN, Kong L, Lee S et al.The long non-coding RNA Dali is an epigenetic regulator of neural differentiation.Elife2014 Nov 21;3:e04530.
|
Download |
Download |
Human |
Knockdown |
DEANR1 |
NA |
NA |
Normal |
GSE44875 |
Jiang W, Liu Y, Liu R, Zhang K et al.The lncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression.Cell Rep2015 Apr 7;11(1):137-48.
|
Download |
Download |
Human |
Overexpression |
NBAT1 |
Breast |
MDA-MB-231 |
Breast cancer |
GSE68034 |
Hu P, Chu J, Wu Y, Sun L et al.NBAT1 suppresses breast cancer metastasis by regulating DKK1 via PRC2.Oncotarget2015 Oct 20;6(32):32410-25.
|
Download |
Download |
Human |
Knockdown |
WiNTRLINC1 |
Duke's type B adenocarcinoma o |
LS174T |
Colorectal cancer? |
GSE69036 |
Giakountis A, Moulos P, Zarkou V, Oikonomou C et al.A Positive Regulatory Loop between a Wnt-Regulated Non-coding RNA and ASCL2 Controls Intestinal Stem Cell Fate.Cell Rep2016 Jun 21;15(12):2588-96.
|
Download |
Download |
Human |
Knockdown |
LINC01212 |
Skin |
NA |
Melanoma |
GSE70176 |
Leucci E, Vendramin R, Spinazzi M, Laurette P et al.Melanoma addiction to the long non-coding RNA SAMMSON.Nature2016 Mar 24;531(7595):518-22.
|
Download |
Download |
Human |
Knockdown |
LINC01212 |
Skin |
SKMEL28 |
Melanoma |
GSE70176 |
Leucci E, Vendramin R, Spinazzi M, Laurette P et al.Melanoma addiction to the long non-coding RNA SAMMSON.Nature2016 Mar 24;531(7595):518-22.
|
Download |
Download |
Human |
Knockdown |
LINC01212 |
Skin |
NA |
Melanoma |
GSE70176 |
Leucci E, Vendramin R, Spinazzi M, Laurette P et al.Melanoma addiction to the long non-coding RNA SAMMSON.Nature2016 Mar 24;531(7595):518-22.
|
Download |
Download |
Human |
Overexpression |
NDRG1-OT1 |
NA |
MCF-7 |
Breast cancer |
GSE72881 |
Lin HC, Yeh CC, Chao LY, Tsai MH et al.The hypoxia-responsive lncRNA NDRG-OT1 promotes NDRG1 degradation via ubiquitin-mediated proteolysis in breast cancer cells.Oncotarget2018 Feb 13;9(12):10470-10482.
|
Download |
Download |
Human |
Knockdown |
LOC440173 |
NA |
HEK293 |
Normal |
GSE74325 |
Weirick T, Militello G, Ponomareva Y, John D et al.Logic programming to infer complex RNA expression patterns from RNA-seq data.Brief Bioinform2018 Mar 1;19(2):199-209.
|
Download |
Download |
Human |
Knockdown |
LOC440173 |
NA |
HEK293 |
Normal |
GSE74325 |
Weirick T, Militello G, Ponomareva Y, John D et al.Logic programming to infer complex RNA expression patterns from RNA-seq data.Brief Bioinform2018 Mar 1;19(2):199-209.
|
Download |
Download |
Human |
Knockdown |
PAXIP1-AS1 |
NA |
HEK293 |
Normal |
GSE74325 |
Weirick T, Militello G, Ponomareva Y, John D et al.Logic programming to infer complex RNA expression patterns from RNA-seq data.Brief Bioinform2018 Mar 1;19(2):199-209.
|
Download |
Download |
Human |
Knockdown |
DANCR |
NA |
PC3 |
Normal |
GSE76176 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
CONCR |
NA |
A549 |
Normal |
GSE81599 |
Marchese FP, Grossi E, Marín-Béjar O, Bharti SK et al.A Long Noncoding RNA Regulates Sister Chromatid Cohesion.Mol Cell2016 Aug 4;63(3):397-407.
|
Download |
Download |
Human |
Knockdown |
TINCR |
Skin |
WM902B |
Melanoma |
GSE85656 |
Melixetian M, Bossi D, Mihailovich M, Punzi S et al.Long non-coding RNA TINCR suppresses metastatic melanoma dissemination by preventing ATF4 translation.EMBO Rep2021 Mar 3;22(3):e50852.
|
Download |
Download |
Human |
Knockdown |
PINCR |
NA |
HCT116 |
Colorectal cancer |
GSE90085 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
HypERrlnc |
NA |
NA |
Normal |
GSE92887 |
Bischoff FC, Werner A, John D, Boeckel JN et al.Identification and Functional Characterization of Hypoxia-Induced Endoplasmic Reticulum Stress Regulating lncRNA (HypERlnc) in Pericytes.Circ Res2017 Aug 4;121(4):368-375.
|
Download |
Download |
Human |
Overexpression |
CHROME |
NA |
HepG2 |
Liver cancer |
GSE97469 |
Hennessy EJ, van Solingen C, Scacalossi KR, Ouimet M et al.The long noncoding RNA CHROME regulates cholesterol homeostasis in primate.Nat Metab2019 Jan;1(1):98-110.
|
Download |
Download |
Human |
Overexpression |
LINC-PINT |
NA |
HCT116 |
Colon adenocarcinoma |
GSE98928 |
Marín-Béjar O, Mas AM, González J, Martinez D et al.The human lncRNA LINC-PINT inhibits tumor cell invasion through a highly conserved sequence element.Genome Biol2017 Oct 27;18(1):202.
|
Download |
Download |
Human |
Overexpression |
HOTAIR |
NA |
ACHN |
Renal cell carcinoma |
GSE100107 |
Katayama H, Tamai K, Shibuya R, Nakamura M et al.Long non-coding RNA HOTAIR promotes cell migration by upregulating insulin growth factor-binding protein 2 in renal cell carcinoma.Sci Rep2017 Sep 20;7(1):12016.
|
Download |
Download |
Human |
Knockdown |
CASC15 |
bone marrow |
RS4;11 ALL cell line |
Acute lymphoblastic leukemia |
GSE101149 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
NKX2-1-AS1 |
Lung |
NCI-H441 |
Lung carcinoma |
GSE104691 |
Kathuria H, Millien G, McNally L, Gower AC et al.NKX2-1-AS1 negatively regulates CD274/PD-L1, cell-cell interaction genes, and limits human lung carcinoma cell migration.Sci Rep2018 Sep 26;8(1):14418.
|
Download |
Download |
Human |
Knockdown |
NORAD |
NA |
HCT116 |
Normal |
GSE104856 |
Tichon A, Perry RB, Stojic L, Ulitsky I.SAM68 is required for regulation of Pumilio by the NORAD long noncoding RNA.Genes Dev2018 Jan 1;32(1):70-78.
|
Download |
Download |
Human |
Knockdown |
LNMAT1 |
Bladder |
5637 |
Bladder cancer |
GSE106637 |
Chen C, He W, Huang J, Wang B et al.LNMAT1 promotes lymphatic metastasis of bladder cancer via CCL2 dependent macrophage recruitment.Nat Commun2018 Sep 20;9(1):3826.
|
Download |
Download |
Human |
Knockdown |
PCAT19 |
V16A cells |
NA |
Prostate cancer |
GSE106774 |
Hua JT, Ahmed M, Guo H, Zhang Y et al.Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19.Cell2018 Jul 26;174(3):564-575.e18.
|
Download |
Download |
Human |
Knockdown |
LincK |
NA |
MCF-7 |
Breast cancer |
GSE109007 |
Li J, Hao Y, Mao W, Xue X et al.LincK contributes to breast tumorigenesis by promoting proliferation and epithelial-to-mesenchymal transition.J Hematol Oncol2019 Feb 22;12(1):19.
|
Download |
Download |
Human |
Knockdown |
ANRIL |
NA |
NA |
Normal |
GSE111843 |
Bochenek G, Hsler R, El Mokhtari NE, Knig IR et al.The large non-coding RNA ANRIL, which is associated with atherosclerosis, periodontitis and several forms of cancer, regulates ADIPOR1, VAMP3 and C11ORF10.Hum Mol Genet2013 Nov 15;22(22):4516-27.
|
Download |
Download |
Human |
Knockdown |
ANRIL |
NA |
NA |
Normal |
GSE111843 |
Bochenek G, Hsler R, El Mokhtari NE, Knig IR et al.The large non-coding RNA ANRIL, which is associated with atherosclerosis, periodontitis and several forms of cancer, regulates ADIPOR1, VAMP3 and C11ORF10.Hum Mol Genet2013 Nov 15;22(22):4516-27.
|
Download |
Download |
Human |
Knockdown |
ANRIL |
NA |
NA |
Normal |
GSE111844 |
Hubberten M, Bochenek G, Chen H, Hsler R et al.Linear isoforms of the long noncoding RNA CDKN2B-AS1 regulate the c-myc-enhancer binding factor RBMS1.Eur J Hum Genet2019 Jan;27(1):80-89.
|
Download |
Download |
Human |
Knockdown |
ANRIL |
NA |
NA |
Normal |
GSE111844 |
Hubberten M, Bochenek G, Chen H, Hsler R et al.Linear isoforms of the long noncoding RNA CDKN2B-AS1 regulate the c-myc-enhancer binding factor RBMS1.Eur J Hum Genet2019 Jan;27(1):80-89.
|
Download |
Download |
Human |
Knockdown |
CCDC144NL-AS1 |
NA |
H9 |
Normal |
GSE111929 |
Wang Y, Guo B, Xiao Z, Lin H et al.Long noncoding RNA CCDC144NL-AS1 knockdown induces nave-like state conversion of human pluripotent stem cells.Stem Cell Res Ther2019 Jul 29;10(1):220.
|
Download |
Download |
Human |
Knockdown |
CCDC144NL-AS1 |
NA |
H14 |
Normal |
GSE111929 |
Wang Y, Guo B, Xiao Z, Lin H et al.Long noncoding RNA CCDC144NL-AS1 knockdown induces nave-like state conversion of human pluripotent stem cells.Stem Cell Res Ther2019 Jul 29;10(1):220.
|
Download |
Download |
Human |
Knockdown |
CCDC144NL-AS1 |
NA |
HDF_iPS |
Normal |
GSE111929 |
Wang Y, Guo B, Xiao Z, Lin H et al.Long noncoding RNA CCDC144NL-AS1 knockdown induces nave-like state conversion of human pluripotent stem cells.Stem Cell Res Ther2019 Jul 29;10(1):220.
|
Download |
Download |
Human |
Knockdown |
ALAL-1 |
NA |
HCC95 |
Lung cancer |
GSE114632 |
Athie A, Marchese FP, González J, Lozano T et al.Analysis of copy number alterations reveals the lncRNA ALAL-1 as a regulator of lung cancer immune evasion.J Cell Biol2020 Sep 7;219(9).
|
Download |
Download |
Human |
Knockdown |
NORAD |
NA |
HCT116 |
Colon cancer |
GSE114946 |
Munschauer M, Nguyen CT, Sirokman K, Hartigan CR et al.The NORAD lncRNA assembles a topoisomerase complex critical for genome stability.Nature2018 Sep;561(7721):132-136.
|
Download |
Download |
Human |
Knockdown |
NORAD |
NA |
HCT116 |
Colon cancer |
GSE114946 |
Munschauer M, Nguyen CT, Sirokman K, Hartigan CR et al.The NORAD lncRNA assembles a topoisomerase complex critical for genome stability.Nature2018 Sep;561(7721):132-136.
|
Download |
Download |
Human |
Knockdown |
NORAD |
NA |
HCT116 |
Colon cancer |
GSE114946 |
Munschauer M, Nguyen CT, Sirokman K, Hartigan CR et al.The NORAD lncRNA assembles a topoisomerase complex critical for genome stability.Nature2018 Sep;561(7721):132-136.
|
Download |
Download |
Human |
Knockdown |
LINC00941 |
Organotypic human epidermis |
NA |
Normal |
GSE118077 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LINC00941 |
Organotypic human epidermis |
NA |
Normal |
GSE118077 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
MIR503HG |
NA |
NA |
Normal |
GSE118815 |
Monteiro JP, Rodor J, Caudrillier A, Scanlon JP et al.MIR503HG Loss Promotes Endothelial-to-Mesenchymal Transition in Vascular Disease.Circ Res2021 Apr 16;128(8):1173-1190.
|
Download |
Download |
Human |
Overexpression |
MIR503HG |
NA |
NA |
Normal |
GSE118815 |
Monteiro JP, Rodor J, Caudrillier A, Scanlon JP et al.MIR503HG Loss Promotes Endothelial-to-Mesenchymal Transition in Vascular Disease.Circ Res2021 Apr 16;128(8):1173-1190.
|
Download |
Download |
Human |
Knockdown |
HOXC-AS3 |
NA |
BGC-823 |
Gastric cancer |
GSE119021 |
Zhang E, He X, Zhang C, Su J et al.A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1.Genome Biol2018 Oct 4;19(1):154.
|
Download |
Download |
Human |
Knockdown |
AF339830 |
NA |
SW480 |
Colorectal cancer |
GSE119866 |
Tang J, Yan T, Bao Y, Shen C et al.LncRNA GLCC1 promotes colorectal carcinogenesis and glucose metabolism by stabilizing c-Myc.Nat Commun2019 Aug 2;10(1):3499.
|
Download |
Download |
Human |
Knockdown |
KTN1-AS1 |
NA |
ST486 |
Burkitt lymphoma |
GSE119924 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
SCARNA13 |
NA |
HCCLM3 |
Hepatocellular carcinoma |
GSE120095 |
Lan T, Yuan K, Yan X, Xu L et al.LncRNA SNHG10 Facilitates Hepatocarcinogenesis and Metastasis by Modulating Its Homolog SCARNA13 via a Positive Feedback Loop.Cancer Res2019 Jul 1;79(13):3220-3234.
|
Download |
Download |
Human |
Knockdown |
IIRX |
NA |
K562 |
Normal |
GSE120337 |
Wang X, Yang J, Guo G, Feng R et al.Novel lncRNA-IUR suppresses Bcr-Abl-induced tumorigenesis through regulation of STAT5-CD71 pathway.Mol Cancer2019 Apr 8;18(1):84.
|
Download |
Download |
Human |
Knockdown |
COSMOC |
NA |
NA |
Normal |
GSE122434 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
COSMOC |
NA |
NA |
Normal |
GSE122434 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
SENCR |
NA |
NA |
Normal |
GSE122490 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
PCAT1 |
NA |
LNCaP-AI |
Normal |
GSE124519 |
Shang Z, Yu J, Sun L, Tian J et al.LncRNA PCAT1 activates AKT and NF-κB signaling in castration-resistant prostate cancer by regulating the PHLPP/FKBP51/IKKα complex.Nucleic Acids Res2019 May 7;47(8):4211-4225.
|
Download |
Download |
Human |
Overexpression |
hTR |
Osteosarcoma |
U2OS |
Osteosarcoma |
GSE125024 |
Liu H, Yang Y, Ge Y, Liu J et al.TERC promotes cellular inflammatory response independent of telomerase.Nucleic Acids Res2019 Sep 5;47(15):8084-8095.
|
Download |
Download |
Human |
Overexpression |
lnc-Nr2f1 |
NA |
SK-N-SH |
Neuroblastoma |
GSE125267 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
lnc-Nr2f1 |
NA |
SK-N-SH |
Neuroblastoma |
GSE125267 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
TINCR |
Metastasis of cutaneous melano |
WM902B |
Melanoma |
GSE125834 |
Melixetian M, Bossi D, Mihailovich M, Punzi S et al.Long non-coding RNA TINCR suppresses metastatic melanoma dissemination by preventing ATF4 translation.EMBO Rep2021 Mar 3;22(3):e50852.
|
Download |
Download |
Human |
Overexpression |
P14AS |
Colon cancer cell line |
HCT116 |
Colon cancer |
GSE127905 |
Ma W, Qiao J, Zhou J, Gu L et al.Characterization of novel LncRNA P14AS as a protector of ANRIL through AUF1 binding in human cells.Mol Cancer2020 Feb 27;19(1):42.
|
Download |
Download |
Human |
Knockdown |
LINC00565 |
NA |
H226 |
Squamous lung carcinoma |
GSE128326 |
Grossi E, Raimondi I, Goi E, González J et al.A lncRNA-SWI/SNF complex crosstalk controls transcriptional activation at specific promoter regions.Nat Commun2020 Feb 18;11(1):936.
|
Download |
Download |
Human |
Knockdown |
SNHG15 |
NA |
LoVo |
Colorectal cancer |
GSE128998 |
Saeinasab M, Bahrami AR, González J, Marchese FP et al.SNHG15 is a bifunctional MYC-regulated noncoding locus encoding a lncRNA that promotes cell proliferation, invasion and drug resistance in colorectal cancer by interacting with AIF.J Exp Clin Cancer Res2019 Apr 24;38(1):172.
|
Download |
Download |
Human |
Knockdown |
AK096729 |
NA |
SW480 |
Colorectal cancer |
GSE129950 |
Bao Y, Tang J, Qian Y, Sun T et al.Long noncoding RNA BFAL1 mediates enterotoxigenic Bacteroides fragilis-related carcinogenesis in colorectal cancer via the RHEB/mTOR pathway.Cell Death Dis2019 Sep 12;10(9):675.
|
Download |
Download |
Human |
Knockdown |
LINC00920 |
NA |
PC-3 |
Prostate Cancer |
GSE130978 |
Angeles AK, Heckmann D, Flosdorf N, Duensing S et al.The ERG-Regulated LINC00920 Promotes Prostate Cancer Cell Survival via the 14-3-3ε-FOXO Pathway.Mol Cancer Res2020 Oct;18(10):1545-1559.
|
Download |
Download |
Human |
Knockdown |
LINC00920 |
NA |
PC-3 |
Prostate Cancer |
GSE130978 |
Angeles AK, Heckmann D, Flosdorf N, Duensing S et al.The ERG-Regulated LINC00920 Promotes Prostate Cancer Cell Survival via the 14-3-3ε-FOXO Pathway.Mol Cancer Res2020 Oct;18(10):1545-1559.
|
Download |
Download |
Human |
Overexpression |
IBA57-AS1 |
NA |
MGC-803 |
Gastric cancer |
GSE133629 |
Zhang Z, Pi J, Zou D, Wang X et al.microRNA arm-imbalance in part from complementary targets mediated decay promotes gastric cancer progression.Nat Commun2019 Sep 27;10(1):4397.
|
Download |
Download |
Human |
Overexpression |
IRENA |
Macrophages |
NA |
Normal |
GSE134599 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LOC646329 |
NA |
U87 |
Glioma? |
GSE137048 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LOC646329 |
NA |
U87 |
Glioma? |
GSE137048 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LOC646329 |
NA |
U87 |
Glioma? |
GSE137048 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LOC646329 |
NA |
U87 |
Glioma? |
GSE137048 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
SPRY4-IT1 |
NA |
HCT116 |
Colorectal cancer |
GSE140616 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
RP11-326A19.4 |
NA |
HEK293T |
Normal |
GSE142097 |
Soubeyrand S, Nikpay M, Lau P, Turner A et al.CARMAL Is a Long Non-coding RNA Locus That Regulates MFGE8 Expression.Front Genet2020;11:631.
|
Download |
Download |
Human |
Knockdown |
LOC157273 |
NA |
NA |
Normal |
GSE142385 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LOC157273 |
NA |
NA |
Normal |
GSE142385 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
GATA6-AS1 |
NA |
HuES8 |
Normal |
GSE143499 |
Yang J, Lu P, Li M, Yan C et al.GATA6-AS1 Regulates GATA6 Expression to Modulate Human Endoderm Differentiation.Stem Cell Reports2020 Sep 8;15(3):694-705.
|
Download |
Download |
Human |
Overexpression |
SNGH5 |
NA |
A549 |
Lung adenocarcinoma |
GSE143766 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
MIR31HG |
NA |
NA |
Normal |
GSE144752 |
Montes M, Lubas M, Arendrup FS, Mentz B et al.The long non-coding RNA MIR31HG regulates the senescence associated secretory phenotype.Nat Commun2021 Apr 28;12(1):2459.
|
Download |
Download |
Human |
Knockdown |
PIK3CD-AS2 |
Lung |
A549 |
Lung adenocarcinoma |
GSE145018 |
Zheng X, Zhang J, Fang T, Wang X et al.The long non-coding RNA PIK3CD-AS2 promotes lung adenocarcinoma progression via YBX1-mediated suppression of p53 pathway.Oncogenesis2020 Mar 12;9(3):34.
|
Download |
Download |
Human |
Knockdown |
MANCR |
NA |
PC3 |
Prostate cancer |
GSE145081 |
Nagasawa M, Tomimatsu K, Terada K, Kondo K et al.Long non-coding RNA MANCR is a target of BET bromodomain protein BRD4 and plays a critical role in cellular migration and invasion abilities of prostate cancer.Biochem Biophys Res Commun2020 May 21;526(1):128-134.
|
Download |
Download |
Human |
Knockdown |
ERINA |
NA |
T47D |
Breast cancer |
GSE147901 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
LINC00473 |
NA |
NA |
Normal |
GSE148896 |
Tran KV, Brown EL, DeSouza T, Jespersen NZ et al.Human thermogenic adipocyte regulation by the long noncoding RNA LINC00473.Nat Metab2020 May;2(5):397-412.
|
Download |
Download |
Human |
Overexpression |
LINC00473 |
NA |
NA |
Normal |
GSE148896 |
Tran KV, Brown EL, DeSouza T, Jespersen NZ et al.Human thermogenic adipocyte regulation by the long noncoding RNA LINC00473.Nat Metab2020 May;2(5):397-412.
|
Download |
Download |
Human |
Knockdown |
DSCAM-AS1 |
NA |
MCF-7 |
Breast cancer |
GSE150591 |
Elhasnaoui J, Miano V, Ferrero G, Doria E et al.DSCAM-AS1-Driven Proliferation of Breast Cancer Cells Involves Regulation of Alternative Exon Splicing and 3'-End Usage.Cancers (Basel)2020 Jun 3;12(6).
|
Download |
Download |
Human |
Knockdown |
SRA |
NA |
NA |
Normal |
GSE151926 |
Sawaengdee W, Cui K, Zhao K, Hongeng S et al.Genome-Wide Transcriptional Regulation of the Long Non-coding RNA Steroid Receptor RNA Activator in Human Erythroblasts.Front Genet2020;11:850.
|
Download |
Download |
Human |
Knockdown |
SRA |
NA |
K562 |
Erythroleukemia |
GSE151926 |
Sawaengdee W, Cui K, Zhao K, Hongeng S et al.Genome-Wide Transcriptional Regulation of the Long Non-coding RNA Steroid Receptor RNA Activator in Human Erythroblasts.Front Genet2020;11:850.
|
Download |
Download |
Human |
Overexpression |
lincNORS |
NA |
MCF7 |
Breast cancer |
GSE153292 |
Wu X, Niculite CM, Preda MB, Rossi A et al.Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS.Nat Commun2020 Sep 21;11(1):4755.
|
Download |
Download |
Human |
Knockdown |
lincNORS |
NA |
MCF7 |
Breast cancer |
GSE153292 |
Wu X, Niculite CM, Preda MB, Rossi A et al.Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS.Nat Commun2020 Sep 21;11(1):4755.
|
Download |
Download |
Human |
Knockdown |
DDGC |
NA |
KGN |
Granulosa-like tumor |
GSE158555 |
awaiting publication
|
Download |
Download |
Human |
Overexpression |
ZNF593-AS |
NA |
NA |
Normal |
GSE163645 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
AC007128.1 |
NA |
KYSE150 |
Esophageal squamous cell carci |
GSE167345 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LINC02474 |
Colon |
KYSE150 |
Esophageal squamous cell carci |
GSE169722 |
Du T, Gao Q, Zhao Y, Gao J et al.Long Non-coding RNA LINC02474 Affects Metastasis and Apoptosis of Colorectal Cancer by Inhibiting the Expression of GZMB.Front Oncol2021;11:651796.
|
Download |
Download |
Mouse |
Knockdown |
AK017076 |
NA |
NA |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al.Long noncoding RNAs regulate adipogenesis.Proc Natl Acad Sci U S A2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
AK030946 |
NA |
NA |
Normal |
GSE29897 |
Sun L, Goff LA, Trapnell C, Alexander R et al.Long noncoding RNAs regulate adipogenesis.Proc Natl Acad Sci U S A2013 Feb 26;110(9):3387-92.
|
Download |
Download |
Mouse |
Knockdown |
TUNA |
NA |
CCE |
Normal |
GSE46730 |
Lin N, Chang KY, Li Z, Gates K et al.An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.Mol Cell2014 Mar 20;53(6):1005-19.
|
Download |
Download |
Mouse |
Knockdown |
TUNA |
NA |
CCE |
Normal |
GSE46730 |
Lin N, Chang KY, Li Z, Gates K et al.An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.Mol Cell2014 Mar 20;53(6):1005-19.
|
Download |
Download |
Mouse |
Knockdown |
Hotair |
NA |
NA |
Normal |
GSE48005 |
Li L, Liu B, Wapinski OL, Tsai MC et al.Targeted disruption of Hotair leads to homeotic transformation and gene derepression.Cell Rep2013 Oct 17;5(1):3-12.
|
Download |
Download |
Mouse |
Knockdown |
H19 |
NA |
C2C12 |
Normal |
GSE49535 |
Kallen AN, Zhou XB, Xu J, Qiao C et al.The imprinted H19 lncRNA antagonizes let-7 microRNAs.Mol Cell2013 Oct 10;52(1):101-12.
|
Download |
Download |
Mouse |
Knockdown |
Paupar |
NA |
neuro 2A (N2A) |
Neuroblastoma |
GSE52569 |
Vance KW, Sansom SN, Lee S, Chalei V et al.The long non-coding RNA Paupar regulates the expression of both local and distal genes.EMBO J2014 Feb 18;33(4):296-311.
|
Download |
Download |
Mouse |
Knockdown |
Malat1 |
Mammary tumor |
NA |
Mammary carcinoma |
GSE67647 |
Arun G, Diermeier S, Akerman M, Chang KC et al.Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss.Genes Dev2016 Jan 1;30(1):34-51.
|
Download |
Download |
Mouse |
Knockdown |
Malat1 |
Mammary tumor |
NA |
Mammary carcinoma |
GSE67647 |
Arun G, Diermeier S, Akerman M, Chang KC et al.Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss.Genes Dev2016 Jan 1;30(1):34-51.
|
Download |
Download |
Mouse |
Knockdown |
Malat1 |
Mammary tumor |
NA |
Mammary carcinoma |
GSE67647 |
Arun G, Diermeier S, Akerman M, Chang KC et al.Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss.Genes Dev2016 Jan 1;30(1):34-51.
|
Download |
Download |
Mouse |
Overexpression |
Myolinc |
NA |
C2C12 |
Normal |
GSE69455 |
Militello G, Hosen MR, Ponomareva Y, Gellert P et al.A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.J Mol Cell Biol2018 Apr 1;10(2):102-117.
|
Download |
Download |
Mouse |
Knockdown |
LncCPR |
NA |
NA |
Normal |
GSE79499 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
LncCPR |
NA |
NA |
Normal |
GSE79499 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
LncCPR |
NA |
NA |
Normal |
GSE79499 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
LncCPR |
NA |
NA |
Normal |
GSE79499 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
LncCPR |
NA |
NA |
Normal |
GSE79499 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
LncCPR |
NA |
NA |
Normal |
GSE79499 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
LFAR1 |
Liver |
NA |
Normal |
GSE96526 |
Zhang K, Han X, Zhang Z, Zheng L et al.The liver-enriched lnc-LFAR1 promotes liver fibrosis by activating TGFβ and Notch pathways.Nat Commun2017 Jul 26;8(1):144.
|
Download |
Download |
Mouse |
Knockdown |
LFAR1 |
Liver |
NA |
Normal |
GSE96526 |
Zhang K, Han X, Zhang Z, Zheng L et al.The liver-enriched lnc-LFAR1 promotes liver fibrosis by activating TGFβ and Notch pathways.Nat Commun2017 Jul 26;8(1):144.
|
Download |
Download |
Mouse |
Knockdown |
SYISL |
NA |
C2C12 |
Normal |
GSE102087 |
Jin JJ, Lv W, Xia P, Xu ZY et al.Long noncoding RNA SYISL regulates myogenesis by interacting with polycomb repressive complex 2.Proc Natl Acad Sci U S A2018 Oct 16;115(42):E9802-E9811.
|
Download |
Download |
Mouse |
Knockdown |
Firre |
NA |
NA |
Normal |
GSE104427 |
Barutcu AR, Maass PG, Lewandowski JP, Weiner CL et al.A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus.Nat Commun2018 Apr 13;9(1):1444.
|
Download |
Download |
Mouse |
Knockdown |
Firre |
NA |
NA |
Normal |
GSE104427 |
Barutcu AR, Maass PG, Lewandowski JP, Weiner CL et al.A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus.Nat Commun2018 Apr 13;9(1):1444.
|
Download |
Download |
Mouse |
Knockdown |
Dnm3os |
NA |
NA |
Inflammatory diabetes complica |
GSE107557 |
Das S, Reddy MA, Senapati P, Stapleton K et al.Diabetes Mellitus-Induced Long Noncoding RNA Dnm3os Regulates Macrophage Functions and Inflammation via Nuclear Mechanisms.Arterioscler Thromb Vasc Biol2018 Aug;38(8):1806-1820.
|
Download |
Download |
Mouse |
Overexpression |
BC030870 |
NA |
NMuMg |
Normal |
GSE113178 |
Rossi M, Bucci G, Rizzotto D, Bordo D et al.LncRNA EPR controls epithelial proliferation by coordinating Cdkn1a transcription and mRNA decay response to TGF-β.Nat Commun2019 Apr 29;10(1):1969. Zapparoli E, Briata P, Rossi M, Brondolo L et al. Comprehensive multi-omics analysis uncovers a group of TGF-β-regulated genes among lncRNA EPR direct transcriptional targets. Nucleic Acids Res 2020 Sep 18;48(16):9053-9066.
|
Download |
Download |
Mouse |
Overexpression |
BC030870 |
NA |
NMuMg |
Normal |
GSE113178 |
Rossi M, Bucci G, Rizzotto D, Bordo D et al.LncRNA EPR controls epithelial proliferation by coordinating Cdkn1a transcription and mRNA decay response to TGF-β.Nat Commun2019 Apr 29;10(1):1969. Zapparoli E, Briata P, Rossi M, Brondolo L et al. Comprehensive multi-omics analysis uncovers a group of TGF-β-regulated genes among lncRNA EPR direct transcriptional targets. Nucleic Acids Res 2020 Sep 18;48(16):9053-9066.
|
Download |
Download |
Mouse |
Knockdown |
NONMMUT002667 |
NA |
NA |
Normal |
GSE116926 |
Li CJ, Xiao Y, Yang M, Su T et al.Long noncoding RNA Bmncr regulates mesenchymal stem cell fate during skeletal aging.J Clin Invest2018 Dec 3;128(12):5251-5266.
|
Download |
Download |
Mouse |
Knockdown |
Paupar |
NA |
NA |
Normal |
GSE132072 |
Singer RA, Arnes L, Cui Y, Wang J et al.The Long Noncoding RNA Paupar Modulates PAX6 Regulatory Activities to Promote Alpha Cell Development and Function.Cell Metab2019 Dec 3;30(6):1091-1106.e8.
|
Download |
Download |
Mouse |
Knockdown |
MaTAR25 |
Mammary tumor |
NA |
Mammary carcinoma |
GSE142169 |
Chang KC, Diermeier SD, Yu AT, Brine LD et al.MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression.Nat Commun2020 Dec 22;11(1):6438.
|
Download |
Download |
Mouse |
Knockdown |
MaTAR25 |
Mammary tumor |
NA |
Mammary carcinoma |
GSE142169 |
Chang KC, Diermeier SD, Yu AT, Brine LD et al.MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression.Nat Commun2020 Dec 22;11(1):6438.
|
Download |
Download |
Mouse |
Knockdown |
lincRNA-NR_033736 |
NA |
IEC4.1 |
Normal |
GSE145464 |
Li J, Jin K, Li M, Mathy NW et al.A host cell long noncoding RNA NR_033736 regulates type I interferon-mediated gene transcription and modulates intestinal epithelial anti-Cryptosporidium defense.PLoS Pathog2021 Jan;17(1):e1009241.
|
Download |
Download |
Mouse |
Overexpression |
Gas5 |
Nucleus Accumbens |
NA |
Normal |
GSE146005 |
Xu H, Brown AN, Waddell NJ, Liu X et al.Role of Long Noncoding RNA Gas5 in Cocaine Action.Biol Psychiatry2020 Nov 15;88(10):758-766.
|
Download |
Download |
Mouse |
Knockdown |
MEG3 |
NA |
C2C12 |
Normal |
GSE155070 |
awaiting publication
|
Download |
Download |
Mouse |
Knockdown |
GAS5 |
Hippocampal neuronal |
HT22 |
Normal |
GSE163237 |
Wang S, Ke S, Wu Y, Zhang D et al.Functional Network of the Long Non-coding RNA Growth Arrest-Specific Transcript 5 and Its Interacting Proteins in Senescence.Front Genet2021;12:615340.
|
Download |
Download |
Mouse |
Knockdown |
GAS5 |
Hippocampal neuronal |
HT22 |
Normal |
GSE163237 |
Wang S, Ke S, Wu Y, Zhang D et al.Functional Network of the Long Non-coding RNA Growth Arrest-Specific Transcript 5 and Its Interacting Proteins in Senescence.Front Genet2021;12:615340.
|
Download |
Download |
Mouse |
Knockdown |
Myolinc |
NA |
C2C12 |
Normal |
GSE69451 |
Militello G, Hosen MR, Ponomareva Y, Gellert P et al.A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.J Mol Cell Biol2018 Apr 1;10(2):102-117.
|
Download |
Download |
Mouse |
Knockdown |
Myolinc |
NA |
C2C12 |
Normal |
GSE69451 |
Militello G, Hosen MR, Ponomareva Y, Gellert P et al.A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.J Mol Cell Biol2018 Apr 1;10(2):102-117.
|
Download |
Download |
Mouse |
Knockdown |
Myolinc |
NA |
C2C12 |
Normal |
GSE69451 |
Militello G, Hosen MR, Ponomareva Y, Gellert P et al.A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.J Mol Cell Biol2018 Apr 1;10(2):102-117.
|
Download |
Download |
Mouse |
Knockdown |
Myolinc |
NA |
C2C12 |
Normal |
GSE69451 |
Militello G, Hosen MR, Ponomareva Y, Gellert P et al.A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.J Mol Cell Biol2018 Apr 1;10(2):102-117.
|
Download |
Download |
Mouse |
Knockdown |
Myolinc |
NA |
C2C12 |
Normal |
GSE69451 |
Militello G, Hosen MR, Ponomareva Y, Gellert P et al.A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.J Mol Cell Biol2018 Apr 1;10(2):102-117.
|
Download |
Download |
Mouse |
Knockdown |
Myolinc |
NA |
C2C12 |
Normal |
GSE69451 |
Militello G, Hosen MR, Ponomareva Y, Gellert P et al.A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.J Mol Cell Biol2018 Apr 1;10(2):102-117.
|
Download |
Download |
Human |
Knockdown |
DIGIT |
NA |
H1 |
Normal |
GSE75297 |
Daneshvar K, Pondick JV, Kim BM, Zhou C et al.DIGIT Is a Conserved Long Noncoding RNA that Regulates GSC Expression to Control Definitive Endoderm Differentiation of Embryonic Stem Cells.Cell Rep2016 Oct 4;17(2):353-365.
|
Download |
Download |
Human |
Knockdown |
DIGIT |
NA |
H1 |
Normal |
GSE75297 |
Daneshvar K, Pondick JV, Kim BM, Zhou C et al.DIGIT Is a Conserved Long Noncoding RNA that Regulates GSC Expression to Control Definitive Endoderm Differentiation of Embryonic Stem Cells.Cell Rep2016 Oct 4;17(2):353-365.
|
Download |
Download |
Human |
Knockdown |
DIGIT |
NA |
H1 |
Normal |
GSE75297 |
Daneshvar K, Pondick JV, Kim BM, Zhou C et al.DIGIT Is a Conserved Long Noncoding RNA that Regulates GSC Expression to Control Definitive Endoderm Differentiation of Embryonic Stem Cells.Cell Rep2016 Oct 4;17(2):353-365.
|
Download |
Download |
Human |
Knockdown |
lncRNA-HAL |
Breast cancer |
MCF7 |
Breast cancer |
GSE113737 |
awaiting publication
|
Download |
Download |
Human |
Knockdown |
LY6K-AS |
NA |
A549 |
Lung adenocarcinoma |
GSE164419 |
Ali MM, Di Marco M, Mahale S, Jachimowicz D et al.LY6K-AS lncRNA is a lung adenocarcinoma prognostic biomarker and regulator of mitotic progression.Oncogene2021 Apr;40(13):2463-2478.
|
Download |
Download |